Integrated Resources
Western Crop Genetics Alliance:
/media/bchapman/Data1/pangenome_data
/media/bchapman/Data1/pangenome_data/barley_pangenome
/media/bchapman/Data1/pangenome_data/barley_pantranscriptome
IPK Germany:
Barley pangenome: https://doi.ipk-gatersleben.de/DOI/c4d433dc-bf7c-4ad9-9368-69bb77837ca5/3490162b-3d76-4ba1-b6ee-3eaed5f6b644/2/1847940088
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Pangenome browsers:
Sequence Tube Map http://146.118.65.25:3000/
JBrowse: http://146.118.65.25:8082/?data=data/json/Morex_v2
Pretzel: https://barley.plantinformatics.io/
Methods integrated:
Pangenome Graph Builder (pangenome/pggb)
Variation Graph Toolkit (vgteam/vg)
SequenceTubeMap (vgteam/sequenceTubeMap)
Get_Homologuest-EST (eead-csic-compbio/get_homologues)
MultiVis (brettChapman/multivis)
Pretzel (plantinformatics/pretzel)