Integrated Resources

Western Crop Genetics Alliance:

/media/bchapman/Data1/pangenome_data

/media/bchapman/Data1/pangenome_data/barley_pangenome

/media/bchapman/Data1/pangenome_data/barley_pantranscriptome


IPK Germany:

Barley pangenome: https://doi.ipk-gatersleben.de/DOI/c4d433dc-bf7c-4ad9-9368-69bb77837ca5/3490162b-3d76-4ba1-b6ee-3eaed5f6b644/2/1847940088

Morex v3: https://doi.ipk-gatersleben.de/DOI/b2f47dfb-47ff-4114-89ae-bad8dcc515a1/7eb2707b-d447-425c-be7a-fe3f1fae67cb/2

Pangenome browsers:

Sequence Tube Map http://146.118.65.25:3000/

JBrowse: http://146.118.65.25:8082/?data=data/json/Morex_v2

Pretzel: https://barley.plantinformatics.io/


Methods integrated:

Pangenome Graph Builder (pangenome/pggb)

Variation Graph Toolkit (vgteam/vg)

SequenceTubeMap (vgteam/sequenceTubeMap)

Get_Homologuest-EST (eead-csic-compbio/get_homologues)

MultiVis (brettChapman/multivis)

Pretzel (plantinformatics/pretzel)